Apps

Name	Description	Science keywords	Web page	Docker required? Details
Autodock	Autodock predicts how small molecules, such as substrates or drug candidates, bind to a receptor such as a protein.	Biology and Medicine Drug discovery	View
Autodock Vina	A version of Autodock that improves speed and accuracy	Biology and Medicine Drug discovery	View
Autodock Vinardo	A version of Autodock that improves speed and accuracy	Biology and Medicine Drug discovery	View
Boolean chains	Search for shortest boolean chains for specific functions, inspired by problems discussed in The Art of Computer Programming Vol. 4A by Donald E. Knuth.	Mathematics and Computer Science		Yes
Nova API				Yes
Symplectic Attention & Error Envelope	This application generates multi‑precision trajectories of chaotic systems (e.g., double pendulum) using fixed‑step symplectic integrators with optional Kahan compensation. It extracts geometry‑aware symplectic attention features (position‑difference queries, momentum values), robust energy envelope logarithmic slopes, and multi‑head attention entropy spectra. The data is used to investigate the symbolic relationship between numerical error growth and attention entropy, and to perform inverse dynamics perturbation retrieval (“chaotic fingerprinting”). The research aims to build physically interpretable attention mechanisms for long‑term chaotic prediction.	Physics Mathematics and Computer Science Artificial Intelligence and Cognitive Science		Yes

Researchers